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Genetic Regulatory Networks

Guest Editors: Edward R. Dougherty, Tatsuya Akutsu, Paul Dan Cristea, and Ahmed H. Tewfik

  1. Authors: Edward R Dougherty, Tatsuya Akutsu, Paul Dan Cristea and Ahmed H Tewfik

    Citation: EURASIP Journal on Bioinformatics and Systems Biology 2007 2007:17321

    Content type: Editorial

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  2. Hepatocellular carcinoma (HCC) in a liver with advanced-stage chronic hepatitis C (CHC) is induced by hepatitis C virus, which chronically infects about 170 million people worldwide. To elucidate the associati...

    Authors: Sachiyo Aburatani, Fuyan Sun, Shigeru Saito, Masao Honda, Shu-ichi Kaneko and Katsuhisa Horimoto

    Citation: EURASIP Journal on Bioinformatics and Systems Biology 2007 2007:47214

    Content type: Research Article

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  3. We investigate in this paper reverse engineering of gene regulatory networks from time-series microarray data. We apply dynamic Bayesian networks (DBNs) for modeling cell cycle regulations. In developing a net...

    Authors: Isabel Tienda Luna, Yufei Huang, Yufang Yin, Diego P Ruiz Padillo and M Carmen Carrion Perez

    Citation: EURASIP Journal on Bioinformatics and Systems Biology 2007 2007:71312

    Content type: Research Article

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  4. The modeling of genetic regulatory networks is becoming increasingly widespread in the study of biological systems. In the abstract, one would prefer quantitatively comprehensive models, such as a differential...

    Authors: Marcel Brun, Seungchan Kim, Woonjung Choi and Edward R Dougherty

    Citation: EURASIP Journal on Bioinformatics and Systems Biology 2007 2007:82702

    Content type: Research Article

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  5. The cell division cycle comprises a sequence of phenomena controlled by a stable and robust genetic network. We applied a probabilistic genetic network (PGN) to construct a hypothetical model with a dynamical ...

    Authors: Nestor Walter Trepode, Hugo Aguirre Armelin, Michael Bittner, Junior Barrera, Marco Dimas Gubitoso and Ronaldo Fumio Hashimoto

    Citation: EURASIP Journal on Bioinformatics and Systems Biology 2007 2007:73109

    Content type: Research Article

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  6. The inference of gene regulatory networks is a key issue for genomic signal processing. This paper addresses the inference of probabilistic Boolean networks (PBNs) from observed temporal sequences of network s...

    Authors: Stephen Marshall, Le Yu, Yufei Xiao and Edward R Dougherty

    Citation: EURASIP Journal on Bioinformatics and Systems Biology 2007 2007:32454

    Content type: Research Article

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  7. It is desirable to have efficient mathematical methods to extract information about regulatory iterations between genes from repeated measurements of gene transcript concentrations. One piece of information is...

    Authors: Dorothy Bollman, Omar Colón-Reyes and Edusmildo Orozco

    Citation: EURASIP Journal on Bioinformatics and Systems Biology 2007 2007:97356

    Content type: Research Article

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  8. Most current methods for gene regulatory network identification lead to the inference of steady-state networks, that is, networks prevalent over all times, a hypothesis which has been challenged. There has bee...

    Authors: Arvind Rao, Alfred O Hero III, David J States and James Douglas Engel

    Citation: EURASIP Journal on Bioinformatics and Systems Biology 2007 2007:51947

    Content type: Research Article

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  9. A Boolean network is a model used to study the interactions between different genes in genetic regulatory networks. In this paper, we present several algorithms using gene ordering and feedback vertex sets to ...

    Authors: Shu-Qin Zhang, Morihiro Hayashida, Tatsuya Akutsu, Wai-Ki Ching and Michael K Ng

    Citation: EURASIP Journal on Bioinformatics and Systems Biology 2007 2007:20180

    Content type: Research Article

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  10. The gene coexpression study has emerged as a novel holistic approach for microarray data analysis. Different indices have been used in exploring coexpression relationship, but each is associated with certain p...

    Authors: Huai Li, Yu Sun and Ming Zhan

    Citation: EURASIP Journal on Bioinformatics and Systems Biology 2007 2007:49478

    Content type: Research Article

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