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Genomic Signal Processing 2010

  1. Authors: Ulisses Braga-Neto, Rui Kuang, Harri Lähdesmäki, Haris Vikalo and Byung-Jun Yoon

    Citation: EURASIP Journal on Advances in Signal Processing 2011 2010:137263

    Content type: Editorial

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  2. We introduce a generalized-clique hidden Markov model (HMM) and apply it to gene finding in eukaryotes (C. elegans). We demonstrate a HMM structure identification platform that is novel and robustly-performing in...

    Authors: Stephen Winters-Hilt and Carl Baribault

    Citation: EURASIP Journal on Advances in Signal Processing 2010 2010:581373

    Content type: Research Article

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  3. We describe a new method to introduce duration into an HMM using side information that can be put in the form of a martingale series. Our method makes use of ratios of duration cumulant probabilities in a mann...

    Authors: S. Winters-Hilt, Z. Jiang and C. Baribault

    Citation: EURASIP Journal on Advances in Signal Processing 2010 2010:761360

    Content type: Research Article

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  4. Application of ensemble classification rules in genomics and proteomics has become increasingly common. However, the problem of error estimation for these classification rules, particularly for bagging under t...

    Authors: T. T. Vu and U. M. Braga-Neto

    Citation: EURASIP Journal on Advances in Signal Processing 2010 2010:548906

    Content type: Research Article

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  5. Background. Revealing protein-DNA interactions is a key problem in understanding transcriptional regulation at mechanistic level. Computational methods have an important role in predicting transcription factor ta...

    Authors: Xiaofeng Dai, Olli Yli-Harja and Harri Lähdesmäki

    Citation: EURASIP Journal on Advances in Signal Processing 2010 2010:235795

    Content type: Research Article

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  6. DNA microarrays detect the presence and quantify the amounts of nucleic acid molecules of interest. They rely on a chemical attraction between the target molecules and their Watson-Crick complements, which ser...

    Authors: Haris Vikalo and Mahsuni Gokdemir

    Citation: EURASIP Journal on Advances in Signal Processing 2010 2010:736301

    Content type: Research Article

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  7. The coefficient of determination (CoD) has significant applications in genomics, for example, in the inference of gene regulatory networks. We study several CoD estimators, based upon the resubstitution, leave...

    Authors: Ting Chen and Ulisses Braga-Neto

    Citation: EURASIP Journal on Advances in Signal Processing 2010 2010:487893

    Content type: Research Article

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  8. The problem of uncovering transcriptional regulation by transcription factors (TFs) based on microarray data is considered. A novel Bayesian sparse correlated rectified factor model (BSCRFM) is proposed that m...

    Authors: Jia Meng, Jianqiu(Michelle) Zhang, Yuan(Alan) Qi, Yidong Chen and Yufei Huang

    Citation: EURASIP Journal on Advances in Signal Processing 2010 2010:538919

    Content type: Research Article

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