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Genomic Signal Processing 2004

  1. Research Article

    Editorial

    Xiaodong Wang, Edward R. Dougherty, Yidong Chen and Carsten O. Peterson

    EURASIP Journal on Advances in Signal Processing 2004 2004:870241

    Published on: 21 January 2004

  2. Research Article

    Gene Prediction Using Multinomial Probit Regression with Bayesian Gene Selection

    A critical issue for the construction of genetic regulatory networks is the identification of network topology from data. In the context of deterministic and probabilistic Boolean networks, as well as their ex...

    Xiaobo Zhou, Xiaodong Wang and Edward R. Dougherty

    EURASIP Journal on Advances in Signal Processing 2004 2004:624859

    Published on: 21 January 2004

  3. Research Article

    Autoregressive Modeling and Feature Analysis of DNA Sequences

    A parametric signal processing approach for DNA sequence analysis based on autoregressive (AR) modeling is presented. AR model residual errors and AR model parameters are used as features. The AR residual erro...

    Niranjan Chakravarthy, A. Spanias, L. D. Iasemidis and K. Tsakalis

    EURASIP Journal on Advances in Signal Processing 2004 2004:952689

    Published on: 21 January 2004

  4. Research Article

    Genomic Signals of Reoriented ORFs

    Complex representation of nucleotides is used to convert DNA sequences into complex digital genomic signals. The analysis of the cumulated phase and unwrapped phase of DNA genomic signals reveals large-scale f...

    Paul Dan Cristea

    EURASIP Journal on Advances in Signal Processing 2004 2004:804941

    Published on: 21 January 2004

  5. Research Article

    Spectrogram Analysis of Genomes

    We performed frequency-domain analysis in the genomes of various organisms using tricolor spectrograms, identifying several types of distinct visual patterns characterizing specific DNA regions. We relate patt...

    David Sussillo, Anshul Kundaje and Dimitris Anastassiou

    EURASIP Journal on Advances in Signal Processing 2004 2004:790248

    Published on: 21 January 2004

  6. Research Article

    Genomic Signal Processing: The Salient Issues

    This paper considers key issues in the emerging field of genomic signal processing and its relationship to functional genomics. It focuses on some of the biological mechanisms driving the development of genomi...

    Edward R Dougherty, Ilya Shmulevich and Michael L Bittner

    EURASIP Journal on Advances in Signal Processing 2004 2004:832320

    Published on: 21 January 2004

  7. Research Article

    Microarray BASICA: Background Adjustment, Segmentation, Image Compression and Analysis of Microarray Images

    This paper presents microarray BASICA: an integrated image processing tool for background adjustment, segmentation, image compression, and analysis of cDNA microarray images. BASICA uses a fast Mann-Whitney te...

    Jianping Hua, Zhongmin Liu, Zixiang Xiong, Qiang Wu and Kenneth R. Castleman

    EURASIP Journal on Advances in Signal Processing 2004 2004:482358

    Published on: 21 January 2004

  8. Research Article

    Comparative Genomics via Wavelet Analysis for Closely Related Bacteria

    Comparative genomics has been a valuable method for extracting and extrapolating genome information among closely related bacteria. The efficiency of the traditional methods is extremely influenced by the soft...

    Jiuzhou Song, Tony Ware, Shu-Lin Liu and M. Surette

    EURASIP Journal on Advances in Signal Processing 2004 2004:890421

    Published on: 21 January 2004

  9. Research Article

    Reduction Mappings between Probabilistic Boolean Networks

    Probabilistic Boolean networks (PBNs) comprise a model describing a directed graph with rule-based dependences between its nodes. The rules are selected, based on a given probability distribution which provide...

    Ivan Ivanov and Edward R. Dougherty

    EURASIP Journal on Advances in Signal Processing 2004 2004:314935

    Published on: 21 January 2004